Table 2 Names, sequences and specificities of rRNA-targeted oligonucleotide probes used.
Probe | Systematic name1 | Sequence (5'-3') | Specificity |
|---|---|---|---|
Eub3382 | S-D-Bact-0338-a-A-18 | GCTGCCTCCCGTAGGAGT | Domain bacteria |
NON-Eub3382 | S-*-non-0338-a-S-18 | CGACGGAGGGCATCCTCA | Unspecific control probe |
SER14103 | L-G-Brachy-1410-a-A-19 | GTCATTCCATCGAAACATA | Genus Brachyspira |
Pilosi2093 | S-S-B.pilo-0209-a-A-18 | GCTCATCGTGAAGCGAAA | B. pilosicoli |
Br1622 | S-S-Br1622-0637-a-A-18 | CCAAGATCTACAGTATCC | Br1622 |
Treponema | S-G-Trepon-0728-a-A-18 | TCGGCCAGAAACCCGCCT | Treponema spp. |
Borrelia | S-G-Borre-0688-a-A-18 | TATCAACAGATTCCACCC | Borrelia spp. |
Leptospira | S-G-Leptospi-1414-a-A-18 | CGGGTGCTCCCCACTCAG | Leptospira spp. |