Identification of nine sequence types of the 16S rRNA genes of Campylobacter jejuni subsp. jejuni isolated from broilers

Table 2 Campylobacter spp. strains for which the 16S rRNA sequences were retrieved from RDP-II or GenBank and used in the phylogenetic analysis

Species	Strain	Acc no in GenBank	Acc no to an identical seq	No of Ns⁴ in the seq	Identical to Seq type
C. coli	LMG 6440	AF372092
C. coli	LMG 9220	AF550620
C. coli	LMG 15883	AF550621
C. coli	LMG 15884	AF550622
C. coli	H99/155	AF550624
C. coli	B99/131	AF550625
C. coli	ATCC 49941	AY621115
C. coli	NZ1905-94	DQ174136
C. coli	NZ2695-96	DQ174137
C. coli	CCUG 11283	L04312		10
C. coli	RMIT32A	L19738		12
C. coli	H99/119	AF550623			e
C. coli	Lio8	DQ174135³	AF550623		e
C. coli	NZ899-00	DQ174138³	AF550623		e
C. coli	NZ900-95	DQ174139³	AF550623		e
C. coli	NZ4812-94	DQ174140³	AF550623		e
C. jejuni	RM1221²	CP000025			e
C. jejuni	98/E600/5	AF393202³	RM1221		e
C. jejuni	98/E599/10	AF393203³	RM1221		e
C. jejuni	LMG9217	AF550626³	RM1221		e
C. jejuni	CCUG 10937	DQ174141³	RM1221		e
C. jejuni	NCTC 11351	AF372091
C. jejuni	CCUG 11284	L04315		9
C. jejuni	WH11	AF393204³	L04315		d
C. jejuni	BB/224	AF550629³	L04315		d
C. jejuni	LMG 9243	AF550627
C. jejuni	H99/240	AF550628
C. jejuni	TGH9011	Z29326
C. jejuni	SSI 5384-98	Y19244
C. jejuni	NCTC 11168^1,2	AL111168
C. jejuni	6871	AY628389
C. jejuni	81–176²	CP000538			i
C. jejuni	ATCC 294228	DQ174142			h
C. jejuni	B99/206	AF550630³	DQ174142		h
C. jejuni	Lio6	DQ174143			b
C. jejuni	ATCC 49943	AY621112³	DQ174143		b
C. jejuni	CCUG 24567	L14630³	DQ174144
C. doylei	LMG8843	DQ174144
C. doylei	Not defined	AY621111³	DQ174143
C. lari	Not defined	L04316		6
C. upsaliensis	Not defined	L14628		11

¹ Strain for which the whole genome sequence is available.
² The sequence without deletions was used in the tree.
³ This sequence was not used in the tree (Fig. 2), because it was identical to another sequence.
⁴ Number of ambiguities in the sequence, which also reflects the sequencing accuracy.

ISSN: 1751-0147