Primer | Nucleotide sequence*(5′-3′) | Target location | Reference |
---|---|---|---|
sodA | |||
d1 | CCITAYICITAYGAYGCIYTIGARCC | sodA | [14] |
d2 | ARRTARTAIGCRTGYTCCCAIACRTC | ||
mec complex | |||
mA7 | ATATACCAAACCCGACAACTACA | mecA | [18] |
mI6 | CATAACTTCCCATTCTGCAGATG | mecI | |
IS7 | ATGCTTAATGATAGCATCCGAATG | IS1272 | |
IS2 (iS-2) | TGAGGTTATTCAGATATTTCGATGT | IS431 | |
ccr complex | |||
ccrA-UF1 | AATGTGAHGTATTATGTTGYTA | ccrA | [20] |
ccrA-UR1 | GGTTCATTTTTDAARTAGAT | ||
ccrA-UF2 | AYTHCATCGYAAYYTGAAAAA | ccrA | [19] |
ccrA-UR2 | ACGDCCACARTAGTTAGGRTT | ||
ccrA_up | TGCATTCATGTTTTGAGGAC | ccrA | [21] |
ccrA_dw | CAATGTGACGTATTGTGTTG | ||
ccrB-UF1 | CGTGTATCAACDGAAATVCAA | ccrB | [20] |
ccrB-UR1 | CTTTATCACTTTTGAYWATTTC | ||
ccrB_up | GTTCCTTTACCATGGACTTG | ccrB | [21] |
ccrB_dw | CTAGAAGGCTACTATCAAGG | ||
ccrC-UF1 | GCAATGAAACGTCTATTACAA | ccrC1 | [19] |
ccrC-UR1 | TTTCATCRATAACYAAATCA | ||
28-24 | GGAACAATCAGAGCGTGGA | ccrC2 | [20] |
28-26 | ACGTTTCACAGCCCAATTTT |