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Table 2 Significant SNPs for total number of piglets born as a female fertility trait

From: Association between single-nucleotide polymorphisms within candidate genes and fertility in Landrace and Duroc pigs

Breed

NL

NL

ND

ND

Gene

BMPR1B

COX-2

PLCz

PLCz

Genbank

NW_003610967.1

NW_003300644,3

NM_214350.1

NM_214350.1

Chromosome

8

9

5

5

Position

133765484

140252549

57682420

57693191

Genotype

[A/G]

[C/T]

[A/G]

[C/T]

SNP database

rs45435443

rs337596396

rs338483233

rs196952431

Genetic variance (%)

0.27

0.67

0.82

0.71

P-value

0.039

0.042

0.016

0.030

Minor allele frequency (MAF)

0.05

0.48

0.44

0.43

Hardy–Weinberg equilibrium (HWE)

0.82

0.78

0.89

0.62

Consequence

Synonymous variant

3 prime UTR variant

Missense variant

Synonymous variant

  1. The significant SNPs for Landrace (NL) and Duroc (ND) boars based on the performance of their daughters (female fertility). Positions are given according to pig genome build Sscrofa10.2 obtained from the ENSEMBL web site (https://www.ensembl.org)