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Table 2 Significant SNPs for total number of piglets born as a female fertility trait

From: Association between single-nucleotide polymorphisms within candidate genes and fertility in Landrace and Duroc pigs

BreedNLNLNDND
GeneBMPR1BCOX-2PLCzPLCz
GenbankNW_003610967.1NW_003300644,3NM_214350.1NM_214350.1
Chromosome8955
Position1337654841402525495768242057693191
Genotype[A/G][C/T][A/G][C/T]
SNP databasers45435443rs337596396rs338483233rs196952431
Genetic variance (%)0.270.670.820.71
P-value0.0390.0420.0160.030
Minor allele frequency (MAF)0.050.480.440.43
Hardy–Weinberg equilibrium (HWE)0.820.780.890.62
ConsequenceSynonymous variant3 prime UTR variantMissense variantSynonymous variant
  1. The significant SNPs for Landrace (NL) and Duroc (ND) boars based on the performance of their daughters (female fertility). Positions are given according to pig genome build Sscrofa10.2 obtained from the ENSEMBL web site (https://www.ensembl.org)