Number of strains | spa type (PCR) | spa type (WGS)a | Sequence type (ST)a, b | Resistance genesa | Virulence genesa, c | SCCmec elementa | |
---|---|---|---|---|---|---|---|
Study A | |||||||
Farm 1 | Farm 2 | ||||||
13 | 1 | t034 | t011 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
2 | 0 | t034 | t011 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
1 | 0 | t034 | t1255 | ST398 | mecA, blaZ, str, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
8 | 1 | t034 | t034 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
1 | 0 | t034 | t034 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
2 | 1 | Failed | t011 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
0 | 3 | Failed / Not sequenced | t034 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
1 | 0 | t034 | Unknown | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
7 | 1 | t034 | Not whole genome sequenced / sequencing failed | ||||
1 | 0 | t1255 | Not whole genome sequenced | ||||
Study B | |||||||
Farm 1 | Controlled facility | ||||||
0 | 21 | t034 | t034 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
9 | 0 | Not sequenced | t034 | ST398 | mecA, blaZ, lnu(B), lsa(E), tet(M), tet(K), dfrG | aur, hlgA, hlgB, hlgC | Vc (5C2&5) |
0 | 15 | t034 | Not whole genome sequenced |