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Table 3 Polymorphic positions in the nine different 16S rRNA sequence types obtained from C. jejuni isolated from cloacal samples taken within the Swedish Campylobacter program for broilers.

From: Identification of nine sequence types of the 16S rRNA genes of Campylobacter jejuni subsp. jejuni isolated from broilers

Seq type

No of isolates

80

126

141*

205

554*

614*

644

687*

703*

712*

814

821*

986

995

1228*

1244

1400*

A

4

C

A

C

C

C

G

C

C

G

C

A

T

A

T

C

C

T

B

15

C

A

C

T

C

G

C

C

G

C

A

T

A

T

C

C

T

C

1

C

A

C

T

C

G

C

C

G

C

A

T

A

T

C

T

T

D

2

C

A

C

T

C

G

C

C

G

C

G

T

A

T

C

C

T

E

12

C

A

C

T

C

G

C

C

G

C

G

T

T

A

C

C

T

F

1

C

G

C

T

C

G

C

C

G

C

G

T

T

A

C

C

T

G

1

T

A

C

T

C

G

C

C

G

C

A

T

A

T

C

C

T

H

10

T

A

C

T

C

G

C

C

G

C

G

T

T

A

C

C

T

i

1

T

A

C

T

C

G

T

C

G

C

A

T

A

T

C

C

T

CP000025

1

C

A

C

T

C

G

C

C

G

C

G

T

T

A

C

C

T

AL111168

1

T

A

C

T

C

G

C

C

G

C

G

T

A

T

C

C

T

  1. *Positions where some of the C. jejuni 16S rRNA sequences deposited in GenBank by other authors differed from the sequences determined in this study
  2. The nucleotide positions were numbered according to one of the 16S rRNA gene sequences of C. jejuni strain NCTC 11168, for which the whole genome sequence is available from GenBank. However, the 16S rRNA sequence was retrieved from RDP-II [29].
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Acta Veterinaria Scandinavica

ISSN: 1751-0147