Area
|
Sample no
|
No. of cysts isolated by IMSa
|
DAPI (%)b
|
GDHc
|
TPId
|
Bge
|
SSUf
|
---|
Chandigarh
|
Kansal
|
1
|
10
|
100
|
–
|
–
|
–
|
B; MF069062
|
2
|
220
|
30
|
–
|
–
|
–
|
E; MF069058
|
3
|
10
|
100
|
–
|
–
|
–
|
A; MF069057
|
4
|
20
|
100
|
–
|
–
|
–
|
B; MF069047
|
5
|
100
|
40
|
–
|
–
|
–
|
A; MF069052
|
6
|
10
|
100
|
–
|
–
|
–
|
A; MF069051
|
Sector 38 west
|
|
7
|
1000
|
70
|
E; MF084938
|
–
|
–
|
C; MF069071
|
8
|
10,000
|
5
|
E; MF084935
|
–
|
–
|
E; MF069070
|
9
|
10
|
100
|
–
|
–
|
–
|
A; MF069056
|
10
|
10,000
|
90
|
–
|
–
|
–
|
E; MF069059
|
11
|
100
|
60
|
–
|
–
|
–
|
D; MF069055
|
Punjab
|
Singha Devi
|
|
12
|
30
|
67
|
–
|
–
|
–
|
A; MF069054
|
Kurali
|
|
13
|
10,000
|
90
|
E; MF084936
|
E; MF095054
|
E; MF106203
|
E; MF069072
|
14
|
10,000
|
70
|
E; MF084934
|
E; MF095052
|
–
|
–
|
15
|
10,000
|
80
|
–
|
B; MF095053
|
–
|
B, MF069053
|
16
|
20
|
100
|
–
|
–
|
–
|
B; MF069066
|
17
|
20
|
50
|
–
|
–
|
–
|
B; MF069064
|
Jayenti
|
|
18
|
10
|
100
|
–
|
–
|
–
|
B; MF069060
|
Haryana
|
Saketri
|
|
19
|
100
|
10
|
E; MF084937
|
–
|
–
|
–
|
20
|
50
|
60
|
–
|
–
|
–
|
B; MF069050
|
21
|
30
|
30
|
–
|
–
|
–
|
A; MF069068
|
22
|
100
|
40
|
–
|
–
|
–
|
A; MF069067
|
23
|
1000
|
90
|
–
|
–
|
–
|
E; MF069065
|
24
|
40
|
25
|
–
|
–
|
–
|
B; MF069063
|
25
|
20
|
50
|
–
|
–
|
–
|
B; MF069061
|
26
|
120
|
33
|
–
|
–
|
–
|
A; MF069069
|
27
|
500
|
44
|
–
|
–
|
–
|
A; MF069049
|
28
|
160
|
87
|
–
|
–
|
–
|
A; MF069048
|
- PCR conditions and reaction times can be found in Additional file 1
- – no amplification
-
TPI triosephosphate isomerase; GDH glutamate dehydrogenase; BG beta giardin; SSU small subunit; rRNA; − PCR Negative; Assemblage (GenBank Accession number) where sequence of PCR products was obtained
-
aNumber of Giardia cysts used for DNA isolation
-
bproportion of DAPI positive Giardia cysts used for DNA isolation
-
cAdditional file 1; Ref. [4]
-
dAdditional file 1; Ref. [3]
-
eAdditional file 1; Ref. [7]
-
fAdditional file 1; Ref. [1, 2]