Table 1 Significant SNPs for total number of piglets born as a male fertility trait

Breed

NL

NL

ND

ND

ND

Gene

BMPR1B

COX-2

ZP3

PLC_z

VWF

Genbank

NW_003610967.1

NW_003300644.3

NM_213893.1

NM_214350.1

NM_001246221.1

Chromosome

8

9

3

5

5

Position

133743941

140252549

9840522

57682420

67005497

Genotype

[C/T]

[C/T]

[G/T]

[A/G]

[C/T]

SNP database

rs331082315

rs337596396

rs339149260

rs338483233

rs328291649

Genetic variance (%)

0.92

43,101

0. 55

0.71

0. 91

P-value

0.010

0.010

0.018

0.025

0.010

Minor allele frequency (MAF)

0.21

0.48

0.05

0.44

0.43

Hardy–Weinberg equilibrium (HWE)

0.58

0.78

0.19

0.89

0.74

Consequence

3 prime UTR variant

3 prime UTR variant

Intron variant

Missense variant

Missense variant