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Table 1 Primers and PCR conditions. Primers for the rRNA and ITS regions [30,31,32] and for cox1 [33–34] were applied. Pre-denaturation at 95 °C for 5 min, followed by 40 cycles of denaturation at 95 °C for 30 s, annealing at primer specific temperature for 30 s and elongation at 72 °C for a primer specific time, and finally a post elongation at 72 °C for 5 min. For the mtDNA PCR a touchdown procedure was applied: annealing at 53 °C 2 cycles, 51 °C 2 cycles, 50 °C 2 cycles, 49 °C 3 cycles, 48 °C 3 cycles, 47 °C 3 cycles, 46 °C 35 cycles

From: Transversotrema hafniensis n. sp. infection in Poecilia reticulata by cercariae released from Melanoides tuberculata in Denmark

Product

Primer

Sequence

Specific PCR condition

rRNA/ITS, 5’ end

BD1

gaggaattcctggtaagtgcaag

Annealing at 58 °C Elongation for 150 s.

NC2

ttagtttcttttcctccgct

rRNA/ITS, 3’ end

NC5

gtaggtgaacctgcggaaggatcatt

Annealing at 55 °C Elongation for 75 s.

NLR1270

ttcatcccgcatcgccagttc

cox1

MplatCOX1dF

ttwcnttrgatcataag

Annealing, Touchdown Elongation for 120 s.

CO1-R trema

caacaaatcatgatgcaaaagg